I double-triple-checked my board, in order to sort out the issues I talked about in my previous post, but everything looked correct at the hardware level so far... krb then suggested to chat with some people in the PCE homebrew scene, and the well-known hacker Charles MacDonald explained me the weird ROM layout when it comes to games larger than 256Kb. After some attempts, I patched my flash programming software to take care of this layout, and it works !

Here you can see Bomberman '93 running fine on a SuperGrafx. Thank you Pascal and Charles for your help ;)

HuFlashCard